Publications

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M. Ouyang, T. Jeon, A. Sotiras, Q. Peng, V. Mishra, C. Halovanic, M. Chen, L. Chalak, N. Rollins, T. Roberts, C. Davatzikos, H. Huang (2019). Differential cortical microstructural maturation in the preterm human brain with diffusion kurtosis and tensor imaging. Proceedings of the National Academy of Sciences.

E. Varol, A. Sotiras, K. Zeng, C. Davatzikos (2018). Generative discriminative models for multivariate inference and statistical mapping in medical imaging. Medical Image Computing and Computer-Assisted Intervention.

PDF DOI Springer

M. Habes, A. Sotiras, G. Erus, J. B. Toledo, D. Janowitz, D. A. Wolk, H. Shou, N. R. Bryan, J. Doshi, H. Volzke, U. Schminke, W. Hoffmann, S. M. Resnick^*, H. J. Grabe^*, C. Davatzikos^* (2018). White matter lesions: Spatial heterogeneity, links to risk factors, cognition, genetics, and atrophy. Neurology.

A. Sotiras, M. Bilgel, G. Erus, Y. Jie Chen, M. Habes, I. Nasrallah, H. Shou, D. A. Wolk, S. M. Resnick, C. Davatzikos (2018). Multivariate Pattern Analysis on a Longitudinal Cohort of Cognitively Normal Elderly Reveals Distinct Stages of Regional Amyloid Deposition. Alzheimer’s Association International Conference.

E. Varol, A. Sotiras, C. Davatzikos (2018). MIDAS: Regionally linear multivariate discriminative statistical mapping. NeuroImage.

M. Habes, G. Erus, A. Sotiras, J. Doshi,, Y. Fan, I. Nasrallah, D. A. Wolk, C. Davatzikos (2018). Imaging Signatures of AD, Brain Aging and White Matter Hyperintensities Show Dissociable Associations with Cognitive Decline in Healthy Subjects Longitudinally Followed in ADNI. Alzheimer’s Association International Conference.

G. Erus, A. Sotiras, M. Habes, J. Doshi, C. Davatzikos (2018). CSF-CAT: A Composite Csf Aβ and Tau Index Toward Radio-Pathomics of Alzheimer's Disease. Alzheimer’s Association International Conference.

D. P. Varikuti^*, S. Genon^*, A. Sotiras, H. Schwender, F. Hoffstaedter, K. R. Patil, C. Jockwitz, S. Caspers, S. Moebus, K. Amunts, C. Davatzikos, S. B. Eickhoff (2018). Evaluation of non-negative matrix factorization of grey matter in age prediction. NeuroImage.

R. Jirsaraie, S. Rush, A. Kaczkurkin, A. Rosen, A. Sotiras, R. Ciric, P. Cook, M. Elliott, D. Roalf, D. Bassett, R. Shinohara, E. Leibenluft, C. Davatzikos, D. Wolf, T. Satterthwaite (2018). Accelerated Cortical Thinning Within Structural Brain Networks is Associated With Irritability in Youth. Society of Biological Psychiatry Annual Meeting.

R. Nassar^*, A. N Kaczkurkin^*, C. Huchuan Xia, A. Sotiras, M. Pehlivanova, T. M Moore, A. Garcia de La Garza, D. R. Roalf, A. F. G. Rosen, S. A Lorch, K. Ruparel, R. T. Shinohara, C. Davatzikos, R. C Gur, R. E Gur, T. D. Satterthwaite (2018). Gestational Age is Dimensionally Associated with Structural Brain Network Abnormalities Across Development. Cerebral Cortex.

M. Pehlivanova, D. H. Wolf, A. Sotiras, A. Kaczkurkin, T. M. Moore, R. Ciric, P. A. Cook, A. Garcia de La Garza, A. Rosen, K. Ruparel, A. Sharma, R. T. Shinohara, D. R. Roalf, R. C. Gur, C. Davatzikos, R. E. Gur, J. W. Kable, T. D. Satterthwaite (2018). Diminished Cortical Thickness is Associated with Impulsive Choice in Adolescence. The Journal of Neuroscience.

K. Zeng, A. Sotiras, C. Davatzikos (2018). Statistically-constrained robust diffeomorphic registration. IEEE International Symposium on Biomedical Imaging.

E. B Baller, A. N. Kaczkurkin, A. Sotiras, E. Varol, T. M. Moore, C. Huchuan Xia, M. E. Calkins, R. E. Gur, R. C. Gur, D. H. Wolf, D. S. Bassett, C. Davatzikos, T. D. Satterthwaite (2018). Semi-supervised machine learning reveals 3 patterns of cognitive impairment in depressed youth. American College of Neuropsychopharmacology.

E. Varol, A. Sotiras, C. Davatzikos (2018). Regionally discriminative multivariate statistical mapping. IEEE International Symposium on Biomedical Imaging.

A. N. Kaczkurkin, R. Nassar, C. Xia, A. Sotiras, M. Pehlivanova, T. M. Moore, A. Garcia de La Garza, D. R. Roalf, A. Rosen, S. A. Lorch, K. Ruparel, R. T. Shinohara, C. Davatzikos, R. C. Gur, R. E. Gur, T. D. Satterthwaite (2018). Premature Birth is Associated with Structural Brain Network Abnormalities Across Development. Organization for Human Brain Mapping Annual Meeting.

Y. Chen, A. Sotiras, I. Nasrallah, R. Akhtar, J. Rick, A. Chen-Plotkin, J. Trojanowski, D. Weintraub, C. Davatzikos, J. Dubroff (2018). Non-negative matrix factorization evaluation of patterns of brain Aβ deposition in Parkinson's disease, Alzheimer's disease and normal controls on [18F]florbetapir PET. Society of Nuclear Medicine and Molecular Imaging Annual Meeting.

J. Chen, K. Patil, S. Kang, T. Nickl-Jockschat, H. Juan Zhou, A. Aleman, I. Sommer, U. Habel, V. Diwadkar, V. Riedl, R. Jardri, O. Gruber, A. Sotiras, C. Davatzikos, S. B. Eickhoff (2018). Modeling the psychopathology in schizophrenia by machine learning analysis: a worldwide multi-center study. Organization for Human Brain Mapping Annual Meeting.

S. Genon^*, D. P. Varikuti^*, A. Sotiras, H. Schwender, F. Hoffstaedter, K. R. Patil, C. Jockwitz, S. Caspers, K. Amunts, S. Moebus, C. Davatzikos, S. B. Eickhoff (2018). Localized compression of grey matter maps for age prediction in healthy & clinical populations. Organization for Human Brain Mapping Annual Meeting.

A. Sotiras, M. Bilgel, G. Erus, Y. J. Chen, M. Habes, I. Nasrallah, H. Shou, D. A. Wolk, S. M. Resnick, C. Davatzikos (2018). In Vivo Staging of Regional Amyloid Deposition through Multivariate Pattern Analysis. Pendergrass Symposium.

C. Davatzikos, S. Rathore, S. Bakas, S. Pati, M. Bergman, R. Kalarot, P. Sridharan, A. Gastounioti, N. Jahani, E. Cohen, H. Akbari, B. Tunc, J. Doshi, D. Parker, M. Hsieh, A. Sotiras, H. Li, Y. Ou, R. K. Doot, M. Bilello, Y. Fan, R. T. Shinohara, P. Yushkevich, R. Verma, D. Kontos (2018). Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. Journal of Medical Imaging.

S. Bakas, G. Shukla, H. Akbari, A. Sotiras, G.Erus, M. Rozycki, G. S. Alexander, J. Lombardo, R. T. Shinohara, C. Davatzikos (2017). Accurate And Generalizable Pre-operative Prognostic Stratification Of Glioblastoma Patients Using Integrative Quantitative Radiomic Analysis Of Conventional MRI. Society for Neuro-Oncology Annual Meeting.

G. Shukla, S. Bakas, S. Rathore, H. Akbari, A. Sotiras, C. Davatzikos (2017). Radiomic Features from Multi-Institutional Glioblastoma MRI Offer Additive Prognostic Value to Clinical and Genomic Markers: Focus on TCGA-GBM Collection. American Society for Radiation Oncology Annual Meeting.

S. Bakas, H. Akbari, A. Sotiras, M. Bilello, M. Rozycki, J. S Kirby, J. B Freymann, K. Farahani, C. Davatzikos (2017). Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features. Scientific Data.

A. Sotiras, J. B. Toledo, R. E. Gur, R. C. Gur, T. D. Satterthwaite^*, C. Davatzikos^* (2017). Patterns of coordinated cortical remodeling during adolescence and their associations with functional specialization and evolutionary expansion. Proceedings of the National Academy of Sciences.

A. Dong, J. B. Toledo, N. Honnorat, J. Doshi, E. Varol, A. Sotiras, D. Wolk, J. Q. Trojanowski, C. Davatzikos (2017). Heterogeneity of neuroanatomical patterns in prodromal Alzheimer's disease: links to cognition, progression and biomarkers. Brain.

E. Varol, A. Sotiras, C. Davatzikos (2017). HYDRA: Revealing heterogeneity of imaging and genetic patterns through a multiple max-margin discriminative analysis framework. NeuroImage.

D. P. Varikuti, A. Sotiras, S. Genon, H. Schwender, F. Hoffstaedter, C. Jockwitz, S. Caspers, S. Moebus, K. Amunts, C. Davatzikos, S. B. Eickhoff (2017). Evaluation of non-negative matrix factorization of gray matter in age prediction. Organization for Human Brain Mapping Annual Meeting.

A. Sotiras, J. B. Toledo, R. C. Gur, R. E. Gur, T. D. Satterthwaite, C. Davatzikos (2017). Coordinated cortical remodeling: connections to functional specialization and evolutionary expansion. Organization for Human Brain Mapping Annual Meeting.

E. Varol, A. Sotiras, C. Davatzikos (2017). Brain mapping through regional multivariate pattern analysis and discriminative adaptive smoothing. Organization for Human Brain Mapping Annual Meeting.

A. Kaczkurkin, R. Nassar, C. Xia, A. Sotiras, M. Pehlivanova, T. M. Moore, A. Garcia de La Garza, D. R. Roalf, A. Rosen, S. Lorch, K. Ruparel, R. T. Shinohara, C. Davatzikos, R. C. Gur, R. E. Gur, T. D. Satterthwaite (2017). A Dimensional Measure of Prematurity is Associated With Structural Brain Network Abnormalities in Children, Adolescents, and Young Adults. NEUROPSYCHOPHARMACOLOGY.

E. Varol, A. Sotiras, C. Davatzikos (2016). Structured Outlier Detection in Neuroimaging Studies with Minimal Convex Polytopes. Medical Image Computing and Computer-Assisted Intervention.

PDF DOI Springer

S. Alchatzidis, A. Sotiras, E. I. Zacharaki, N. Paragios (2016). A Discrete MRF Framework for Integrated Multi-Atlas Registration and Segmentation. International Journal of Computer Vision.

PDF DOI Springer

T. Jeon, A. Sotiras, M. Ouyang, M. Chen, L. Chalak, C. Davatzikos, H. Huang (2016). Spatiotemporal dynamics and patterns of cortical mean kyrtosis and fractional anisotropy in the preterm brains. International Society for Magnetic Resonance in Medicine Annual Meeting.

K. Zeng, S. Bakas, A. Sotiras, H. Akbari, M. Rozycki, S. Rathore, S. Pati, C. Davatzikos (2016). Segmentation of Gliomas in Pre-operative and Post-operative Multimodal Magnetic Resonance Imaging Volumes Based on a Hybrid Generative-Discriminative Framework. International Workshop on Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries.

PDF DOI Springer

A. Sotiras, B. Gaonkar, H. Eavani, N. Honnorat, E. Varol, A. Dong, C. Davatzikos (2016). Machine learning as a means toward precision diagnostics and prognostics. Machine Learning and Medical Imaging.

G. Allen, N. Amoroso, C. Anghel, V. Balagurusamy, C. Bare, D. Beaton, R. Bellotti, D. Bennett, K. Boehme, P. Boutros, L. Caberlotto, C. Caloian, F. Campbell, E. Chaibub Neto, Y. Chang, B. Chen, C. Chen, T. Chien, T. Clark, S. Das, C. Davatzikos, J. Deng, D. Dillenberger, R. Dobson, Q. Dong, J. Doshi, D. Duma, R. Errico, G. Erus, E. Everett, D. Fardo, S. Friend, H. Frohlich, J. Gan, P. St George-Hyslop, S. Ghosh, E. Glaab, R. Green, Y. Guan, M. Hong, C. Huang, J. Hwang, J. Ibrahim, P. Inglese, A. Iyappan, Q. Jiang, Y. Katsumata, J. Kauwe, A. Klein, D. Kong, R. Krause, E. Lalonde, M. Lauria, E. Lee, X. Lin, Z. Liu, J. Livingstone, B. Logsdon, S. Lovestone, T. Ma, A. Malhotra, L. Mangravite, T. Maxwell, E. Merrill, J. Nagorski, A. Namasivayam, M. Narayan, M. Naz, S. Newhouse, T. Norman, R. Nurtdinov, Y. Oyang, Y. Pawitan, S. Peng, M. Peters, S. Piccolo, P. Praveen, C. Priami, V. Sabelnykova, P. Senger, X. Shen, A. Simmons, A. Sotiras, G. Stolovitzky, S. Tangaro, A. Tateo, Y. Tung, N. Tustison, E. Varol, G. Vradenburg, M. Weiner, G. Xiao, L. Xie, Y. Xie, J. Xu, H. Yang, X. Zhan, Y. Zhou, F. Zhu, H. Zhu, S. Zhu (2016). Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimer’s and Dementia.

K. Zeng, G. Erus, A. Sotiras, R. Shinohara, C. Davatzikos (2016). Abnormality Detection via Iterative Deformable Registration and Basis-Pursuit Decomposition. IEEE Transactions on Medical Imaging.

A. Gastounioti, A. Sotiras, K. S. Nikita, N. Paragios (2015). Graph-Based Motion-Driven Segmentation of the Carotid Atherosclerotique Plaque in 2D Ultrasound Sequences. Medical Image Computing and Computer Assisted Intervention.

PDF DOI Springer

E. Varol, A. Sotiras, C. Davatzikos (2015). Disentangling disease heterogeneity with max-margin multiple hyperplane classifier. Medical Image Computing and Computer-Assisted Intervention.

PDF DOI Springer

A. Sotiras, S. M. Resnick, C. Davatzikos (2015). Multivariate spatial patterns of amyloid deposition revealed through non-negative matrix factorization. Alzheimer’s Association International Conference.

S. Alchatzidis, A. Sotiras, N. Paragios (2015). Local atlas selection for discrete multi-atlas segmentation. IEEE International Symposium on Biomedical Imaging.

A. Sotiras, S. M Resnick, C. Davatzikos (2015). Finding imaging patterns of structural covariance via Non-Negative Matrix Factorization. NeuroImage.

V. Fecamp, A. Sotiras, N. Paragios (2015). Simultaneous Linear and Deformable Registration Through a Higher Order MRF Model. International Workshop on Bayesian and Graphical Models for Biomedical Imaging.

V. Fecamp, A. Sotiras, N. Paragios (2015). Modular linear iconic matching using higher order graphs. IEEE International Symposium on Biomedical Imaging.

A. Sotiras, T. D. Satterthwaite, R. C. Gur, R. E. Gur, C. Davatzikos (2015). Mapping Developmental Topography of Brain Morphology through Non-Negative Matrix Factorization. Organization for Human Brain Mapping Annual Meeting.

A. Sotiras^*, Y. Ou^*, N. Paragios, C. Davatzikos (2015). Graph-based Deformable Image Registration. Handbook of Biomedical Imaging.

PDF DOI Springer

S. Bakas, K. Zeng, A. Sotiras, S. Rathore, H. Akbari, B. Gaonkar, M. Rozycki, S. Pati, C. Davatzikos (2015). GLISTRboost: combining multimodal MRI segmentation, registration, and biophysical tumor growth modeling with gradient boosting machines for glioma segmentation. International Workshop on Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries.

PDF DOI Springer

A. Sotiras, R. C. Gur, R. E. Gur, T. D. Satterthwaite, C. Davatzikos (2014). Extracting Spatial Patterns of Cortical Thickness Covariance via Non-Negative Matrix Factorization. Organization for Human Brain Mapping Annual Meeting.

K. Karantzalos, A. Sotiras, N. Paragios (2014). Efficient and Automated Multimodal Satellite Data Registration through MRFs and Linear Programming. IEEE Conference on Computer Vision and Pattern Recognition Workshops.

S. Alchatzidis, A. Sotiras, N. Paragios (2014). Discrete Multi Atlas Segmentation using Agreement Constraints. British Machine Vision Conference.

A. Sotiras, C. Davatzikos, N. Paragios (2013). Deformable Medical Image Registration: A Survey. IEEE Transactions on Medical Imaging.

K. Gkirtzou, J.-F. Deux, G. Bassez, A. Sotiras, A. Rahmouni, T. Varacca, N. Paragios, M. B. Blaschko (2013). Sparse Classification with MRI Based Markers for Neuromuscular Disease Categorization. International Workshop on Machine Learning in Medical Imaging.

PDF DOI Springer

B. Gaonkar, A. Sotiras, C. Davatzikos (2013). Deriving Statistical Significance Maps for Support Vector Regression Using Medical Imaging Data. International Workshop on Pattern Recognition in Neuroimaging.

A. Sotiras, C. Davatzikos, N. Paragios (2012). Deformable Medical Image Registration: A Survey. INRIA.

A. Sotiras, N. Paragios (2012). Discrete symmetric image registration. IEEE International Symposium on Biomedical Imaging.

B. Glocker^*, A. Sotiras^*, N. Komodakis, N. Paragios (2011). Deformable medical image registration: setting the state of the art with discrete methods. Annual review of biomedical engineering.

Y. Ou, A. Sotiras, N. Paragios, C. Davatzikos (2011). DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting. Medical Image Analysis.

S. Alchatzidis, A. Sotiras, N. Paragios (2011). Efficient parallel message computation for MAP inference. IEEE International Conference on Computer Vision.

A. Sotiras, Y. Ou, B. Glocker, C. Davatzikos, N. Paragios (2010). Simultaneous Geometric - Iconic Registration. Medical Image Computing and Computer-Assisted Intervention.

PDF DOI Springer

M. Savinaud, A. Sotiras, S. Maitrejean, N. Paragios (2010). Bioluminescence enhancement through fusion of optical imaging and cinematic video flow. IEEE International Symposium on Biomedical Imaging.

A. Sotiras^*, R. Neji^*, J. Deux, N. Komodakis, G. Fleury, N. Paragios (2010). A Kernel-based graphical model for diffusion tensor registration. IEEE International Symposium on Biomedical Imaging.

A. Sotiras, N. Komodakis, N. Paragios (2009). MRF-based Diffeomorphic Population Deformable Registration Segmentation. INRIA.

A. Sotiras, N. Komodakis, B. Glocker, J. Deux, N. Paragios (2009). Graphical Models and Deformable Diffeomorphic Population Registration Using Global and Local Metric. Medical Image Computing and Computer-Assisted Intervention.

PDF DOI Springer

A. Sotiras, R. Neji, J. Deux, N. Komodakis, M. Maatouk, A. Rahmouni, G. Bassez, G. Fleury, N. Paragios (2009). Diffusion Tensor Registration Using Probability Kernels and Discrete Optimization. INRIA.

A. Sotiras, N. Komodakis, G. Langs, N. Paragios (2009). Atlas-based deformable mutual population segmentation. IEEE International Symposium on Biomedical Imaging.